Table 3 sRNAs predicted from transcriptome data of heat and saline shock
S. No. | sRNA | Start | Stop | Strand | sRNAs length | Distance of up gene | Upstream gene | Distance of down gene | Downstream gene |
|---|---|---|---|---|---|---|---|---|---|
1. | REH1 | 64,166 | 64,238 | – | 72 | 68 | 16S Ribosomal RNA | 76 | Ile tRNA |
2. | REH2 | 135,830 | 135,893 | – | 63 | 14 | hypothetical protein | 100 | hypothetical protein |
3. | REH3 | 236,107 | 236,217 | + | 110 | 11 | hypothetical protein | 374 | hypothetical protein |
4. | REH4 | 351,037 | 351,205 | + | 168 | 91 | GntR family transcriptional regulator | 246 | glutamine amidotransferase |
5. | REH5 | 351,126 | 351,199 | – | 73 | 180 | GntR family transcriptional regulator | 252 | glutamine amidotransferase |
6. | REH6 | 489,951 | 490,025 | + | 74 | 50 | trehalose-6-phosphate synthase | 270 | glucose-6-phosphate isomerase |
7. | REH7 | 648,703 | 648,855 | – | 152 | 224 | two-component response regulator protein | 100 | LuxR family transcriptional regulator |
8. | REH8 | 730,097 | 730,188 | – | 91 | 230 | oxidoreductase | 250 | methyl-accepting chemotaxis protein |
9. | REH9 | 868,406 | 868,463 | – | 57 | 1 | chaperonin GroEL | 1 | co-chaperonin GroES |
10. | REH10 | 909,921 | 909,973 | + | 52 | 31 | ribonuclease HII | 85 | hypothetical protein |
11. | REH11 | 3,940,457 | 3,940,565 | – | 108 | 184 | glutaredoxin protein | 246 | heavy metal-transporting ATPase |
12. | REH12 | 4,100,672 | 4,100,733 | – | 61 | 109 | F0F1 ATP synthase subunit epsilon | 18 | F0F1 ATP synthase subunit beta |
13. | REH13 | 4,122,429 | 4,122,544 | + | 115 | 82 | 2-oxoglutarate dehydrogenase E1 component | 32 | succinyl-CoA synthetase subunit alpha |
14. | REH14 | 55,880 | 55,946 | + | 66 | 244 | Hypothetical protein | 898 | Hypothetical protein |
15. | REH15 | 94,510 | 94,577 | – | 67 | 136 | GntR family transcriptional regulator | 37 | 6-phosphogluconate dehydrogenase |
16. | RES1 | 236,090 | 236,217 | + | 127 | 0 | hypothetical protein | 127 | hypothetical protein |
17. | RES2 | 351,043 | 351,203 | + | 160 | 98 | GntR family transcriptional regulator | 248 | glutamine amidotransferase |
18. | RES3 | 370,123 | 370,180 | – | 57 | 469 | 30S ribosomal protein S20 | 314 | chromosomal replication initiation protein |
19. | RES4 | 562,123 | 562,230 | + | 107 | 89 | hypothetical protein | 349 | hypothetical protein |
20. | RES5 | 562,200 | 562,297 | – | 97 | 166 | hypothetical protein | 282 | hypothetical protein |
21. | RES6 | 630,669 | 630,835 | – | 166 | 48 | ribose ABC transporter, substrate-binding protein | 1 | ribose ABC transporter, ATP-binding protein |
22. | RES7 | 730,014 | 730,067 | + | 53 | 147 | oxidoreductase | 403 | methyl-accepting chemotaxis protein |
23. | RES8 | 909,943 | 910,038 | – | 95 | 53 | ribonuclease HII | 20 | hypothetical protein |
24. | RES9 | 1,926,293 | 1,926,364 | + | 71 | 106 | hypothetical protein | 284 | hypothetical protein |
25. | RES10 | 3,051,143 | 3,051,203 | – | 60 | 206 | N-acyl-L-homoserine lactone (AHL) synthase | 54 | two-component response regulator protein |
26. | RES11 | 3,776,485 | 3,776,552 | + | 67 | 169 | hypothetical protein | 207 | hypothetical protein |
27. | RES12 | 1,754,046 | 1,754,157 | + | 111 | 118 | 50S ribosomal protein L7/L12 | 30 | DNA-directed RNA polymerase subunit beta |
28. | RES13 | 1,548,328 | 1,548,402 | + | 74 | 133 | molybdopterin converting factor subunit 2 protein | 3 | molybdopterin converting factor subunit 1 protein |
29. | RES14 | 127,134 | 127,190 | – | 56 | 1203 | hypothetical protein | 1323 | hypothetical protein |
30. | RES15 | 572,116 | 572,220 | – | 104 | cytochrome C oxidase, fixN chain protein | 189 | nitrogen fixation transcriptional regulator protein |